J6_6N9E_001

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAGC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUACUCC

Length

41 nucleotides

Bulged bases

6N9E|1|1A|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9E|1|1A|G|42
6N9E|1|1A|A|43
6N9E|1|1A|G|44
6N9E|1|1A|C|45
*
6N9E|1|1A|G|168
6N9E|1|1A|G|169
6N9E|1|1A|A|170
6N9E|1|1A|A|171
6N9E|1|1A|C|172
*
6N9E|1|1A|G|203
6N9E|1|1A|G|204
6N9E|1|1A|A|205
6N9E|1|1A|G|206
6N9E|1|1A|A|207
6N9E|1|1A|G|208
6N9E|1|1A|G|209
6N9E|1|1A|A|210
6N9E|1|1A|A|211
6N9E|1|1A|A|212
6N9E|1|1A|G|213
*
6N9E|1|1A|C|220
6N9E|1|1A|G|221
6N9E|1|1A|A|222
6N9E|1|1A|C|223
6N9E|1|1A|U|224
*
6N9E|1|1A|A|251
6N9E|1|1A|C|252
6N9E|1|1A|C|253
6N9E|1|1A|A|254
6N9E|1|1A|G|255
*
6N9E|1|1A|C|453
6N9E|1|1A|U|454
6N9E|1|1A|A|455
6N9E|1|1A|A|456
6N9E|1|1A|G|457
6N9E|1|1A|U|458
6N9E|1|1A|A|459
6N9E|1|1A|C|460
6N9E|1|1A|U|461
6N9E|1|1A|C|462
6N9E|1|1A|C|463

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34