J6_6N9F_003

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6N9F|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9F|1|2A|G|44
6N9F|1|2A|C|45
*
6N9F|1|2A|G|179
6N9F|1|2A|G|180
6N9F|1|2A|A|181
6N9F|1|2A|A|182
6N9F|1|2A|C|183
*
6N9F|1|2A|G|214
6N9F|1|2A|G|215
6N9F|1|2A|A|216
6N9F|1|2A|G|217
6N9F|1|2A|A|218
6N9F|1|2A|G|219
6N9F|1|2A|G|220
6N9F|1|2A|A|221
6N9F|1|2A|A|222
6N9F|1|2A|A|223
6N9F|1|2A|G|224
*
6N9F|1|2A|C|231
6N9F|1|2A|G|232
6N9F|1|2A|A|233
6N9F|1|2A|C|234
6N9F|1|2A|U|235
*
6N9F|1|2A|A|262
6N9F|1|2A|C|263
6N9F|1|2A|C|264
6N9F|1|2A|A|265
6N9F|1|2A|G|266
*
6N9F|1|2A|C|426
6N9F|1|2A|U|427
6N9F|1|2A|A|428
6N9F|1|2A|A|429
6N9F|1|2A|G|430
6N9F|1|2A|U|431
6N9F|1|2A|A|432
6N9F|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34