3D structure

PDB id
6N9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
6N9F|1|2A|U|2076, 6N9F|1|2A|A|2388, 6N9F|1|2A|U|2390, 6N9F|1|2A|G|2428, 6N9F|1|2A|A|2430, 6N9F|1|2A|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6N9F|1|2A|U|2074
6N9F|1|2A|U|2075
6N9F|1|2A|U|2076
6N9F|1|2A|A|2077
*
6N9F|1|2A|U|2243
6N9F|1|2A|U|2244
6N9F|1|2A|U|2245
6N9F|1|2A|G|2246
*
6N9F|1|2A|C|2258
6N9F|1|2A|G|2259
*
6N9F|1|2A|C|2281
6N9F|1|2A|G|2282
6N9F|1|2A|C|2283
6N9F|1|2A|C|2284
*
6N9F|1|2A|G|2384
6N9F|1|2A|C|2385
6N9F|1|2A|C|2386
6N9F|1|2A|U|2387
6N9F|1|2A|A|2388
6N9F|1|2A|G|2389
6N9F|1|2A|U|2390
6N9F|1|2A|G|2391
6N9F|1|2A|A|2392
6N9F|1|2A|A|2393
6N9F|1|2A|C|2394
6N9F|1|2A|C|2395
*
6N9F|1|2A|G|2421
6N9F|1|2A|A|2422
6N9F|1|2A|U|2423
6N9F|1|2A|C|2424
6N9F|1|2A|A|2425
6N9F|1|2A|A|2426
6N9F|1|2A|C|2427
6N9F|1|2A|G|2428
6N9F|1|2A|G|2429
6N9F|1|2A|A|2430
6N9F|1|2A|U|2431
6N9F|1|2A|A|2432
6N9F|1|2A|A|2433
6N9F|1|2A|A|2434
6N9F|1|2A|A|2435

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 21
50S ribosomal protein L28
Chain 26
50S ribosomal protein L33
Chain 28
50S Ribosomal Protein L35
Chain 2D
50S Ribosomal Protein L2
Chain 2P
50S Ribosomal Protein L15

Coloring options:

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