J6_6NDK_001

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAGC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUACUCC

Length

41 nucleotides

Bulged bases

6NDK|1|RA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NDK|1|RA|G|42
6NDK|1|RA|A|43
6NDK|1|RA|G|44
6NDK|1|RA|C|45
*
6NDK|1|RA|G|179
6NDK|1|RA|G|180
6NDK|1|RA|A|181
6NDK|1|RA|A|182
6NDK|1|RA|C|183
*
6NDK|1|RA|G|214
6NDK|1|RA|G|215
6NDK|1|RA|A|216
6NDK|1|RA|G|217
6NDK|1|RA|A|218
6NDK|1|RA|G|219
6NDK|1|RA|G|220
6NDK|1|RA|A|221
6NDK|1|RA|A|222
6NDK|1|RA|A|223
6NDK|1|RA|G|224
*
6NDK|1|RA|C|231
6NDK|1|RA|G|232
6NDK|1|RA|A|233
6NDK|1|RA|C|234
6NDK|1|RA|U|235
*
6NDK|1|RA|A|262
6NDK|1|RA|C|263
6NDK|1|RA|C|264
6NDK|1|RA|A|265
6NDK|1|RA|G|266
*
6NDK|1|RA|C|426
6NDK|1|RA|U|427
6NDK|1|RA|A|428
6NDK|1|RA|A|429
6NDK|1|RA|G|430
6NDK|1|RA|U|431
6NDK|1|RA|A|432
6NDK|1|RA|C|433
6NDK|1|RA|U|434
6NDK|1|RA|C|435
6NDK|1|RA|C|436

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34