J6_6O97_002

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

6O97|1|1A|U|2076, 6O97|1|1A|A|2388, 6O97|1|1A|U|2390, 6O97|1|1A|G|2428, 6O97|1|1A|A|2430, 6O97|1|1A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6O97|1|1A|U|2074
6O97|1|1A|U|2075
6O97|1|1A|U|2076
6O97|1|1A|A|2077
*
6O97|1|1A|U|2243
6O97|1|1A|U|2244
6O97|1|1A|U|2245
6O97|1|1A|G|2246
*
6O97|1|1A|C|2258
6O97|1|1A|G|2259
*
6O97|1|1A|C|2281
6O97|1|1A|G|2282
6O97|1|1A|C|2283
6O97|1|1A|C|2284
*
6O97|1|1A|G|2384
6O97|1|1A|C|2385
6O97|1|1A|C|2386
6O97|1|1A|U|2387
6O97|1|1A|A|2388
6O97|1|1A|G|2389
6O97|1|1A|U|2390
6O97|1|1A|G|2391
6O97|1|1A|A|2392
6O97|1|1A|A|2393
6O97|1|1A|C|2394
6O97|1|1A|C|2395
*
6O97|1|1A|G|2421
6O97|1|1A|A|2422
6O97|1|1A|U|2423
6O97|1|1A|C|2424
6O97|1|1A|A|2425
6O97|1|1A|A|2426
6O97|1|1A|C|2427
6O97|1|1A|G|2428
6O97|1|1A|G|2429
6O97|1|1A|A|2430
6O97|1|1A|U|2431
6O97|1|1A|A|2432
6O97|1|1A|A|2433
6O97|1|1A|A|2434
6O97|1|1A|A|2435

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 11

50S ribosomal protein L28

Chain 16

50S ribosomal protein L33

Chain 18

50S ribosomal protein L35

Chain 1D

50S ribosomal protein L2

Chain 1P

50S ribosomal protein L15

Chain 1y

Transfer RNA; tRNA