J6_6OF1_003

3D structure

PDB id

6OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6OF1|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OF1|1|2A|G|44
6OF1|1|2A|C|45
*
6OF1|1|2A|G|179
6OF1|1|2A|G|180
6OF1|1|2A|A|181
6OF1|1|2A|A|182
6OF1|1|2A|C|183
*
6OF1|1|2A|G|214
6OF1|1|2A|G|215
6OF1|1|2A|A|216
6OF1|1|2A|G|217
6OF1|1|2A|A|218
6OF1|1|2A|G|219
6OF1|1|2A|G|220
6OF1|1|2A|A|221
6OF1|1|2A|A|222
6OF1|1|2A|A|223
6OF1|1|2A|G|224
*
6OF1|1|2A|C|231
6OF1|1|2A|G|232
6OF1|1|2A|A|233
6OF1|1|2A|C|234
6OF1|1|2A|U|235
*
6OF1|1|2A|A|262
6OF1|1|2A|C|263
6OF1|1|2A|C|264
6OF1|1|2A|A|265
6OF1|1|2A|G|266
*
6OF1|1|2A|C|426
6OF1|1|2A|U|427
6OF1|1|2A|A|428
6OF1|1|2A|A|429
6OF1|1|2A|G|430
6OF1|1|2A|U|431
6OF1|1|2A|A|432
6OF1|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34