J6_6OF6_004
3D structure
- PDB id
- 6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 6OF6|1|YA|U|2076, 6OF6|1|YA|A|2388, 6OF6|1|YA|U|2390, 6OF6|1|YA|G|2428, 6OF6|1|YA|A|2430, 6OF6|1|YA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OF6|1|YA|U|2074
6OF6|1|YA|U|2075
6OF6|1|YA|U|2076
6OF6|1|YA|A|2077
*
6OF6|1|YA|U|2243
6OF6|1|YA|U|2244
6OF6|1|YA|U|2245
6OF6|1|YA|G|2246
*
6OF6|1|YA|C|2258
6OF6|1|YA|G|2259
*
6OF6|1|YA|C|2281
6OF6|1|YA|G|2282
6OF6|1|YA|C|2283
6OF6|1|YA|C|2284
*
6OF6|1|YA|G|2384
6OF6|1|YA|C|2385
6OF6|1|YA|C|2386
6OF6|1|YA|U|2387
6OF6|1|YA|A|2388
6OF6|1|YA|G|2389
6OF6|1|YA|U|2390
6OF6|1|YA|G|2391
6OF6|1|YA|A|2392
6OF6|1|YA|A|2393
6OF6|1|YA|C|2394
6OF6|1|YA|C|2395
*
6OF6|1|YA|G|2421
6OF6|1|YA|A|2422
6OF6|1|YA|U|2423
6OF6|1|YA|C|2424
6OF6|1|YA|A|2425
6OF6|1|YA|A|2426
6OF6|1|YA|C|2427
6OF6|1|YA|G|2428
6OF6|1|YA|G|2429
6OF6|1|YA|A|2430
6OF6|1|YA|U|2431
6OF6|1|YA|A|2432
6OF6|1|YA|A|2433
6OF6|1|YA|A|2434
6OF6|1|YA|A|2435
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XW
- Transfer RNA; tRNA
- Chain Y0
- 50S ribosomal protein L27
- Chain Y1
- 50S ribosomal protein L28
- Chain Y6
- 50S ribosomal protein L33
- Chain Y8
- 50S ribosomal protein L35
- Chain YD
- 50S ribosomal protein L2
- Chain YP
- 50S ribosomal protein L15
Coloring options: