3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
6OF6|1|YA|U|2076, 6OF6|1|YA|A|2388, 6OF6|1|YA|U|2390, 6OF6|1|YA|G|2428, 6OF6|1|YA|A|2430, 6OF6|1|YA|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OF6|1|YA|U|2074
6OF6|1|YA|U|2075
6OF6|1|YA|U|2076
6OF6|1|YA|A|2077
*
6OF6|1|YA|U|2243
6OF6|1|YA|U|2244
6OF6|1|YA|U|2245
6OF6|1|YA|G|2246
*
6OF6|1|YA|C|2258
6OF6|1|YA|G|2259
*
6OF6|1|YA|C|2281
6OF6|1|YA|G|2282
6OF6|1|YA|C|2283
6OF6|1|YA|C|2284
*
6OF6|1|YA|G|2384
6OF6|1|YA|C|2385
6OF6|1|YA|C|2386
6OF6|1|YA|U|2387
6OF6|1|YA|A|2388
6OF6|1|YA|G|2389
6OF6|1|YA|U|2390
6OF6|1|YA|G|2391
6OF6|1|YA|A|2392
6OF6|1|YA|A|2393
6OF6|1|YA|C|2394
6OF6|1|YA|C|2395
*
6OF6|1|YA|G|2421
6OF6|1|YA|A|2422
6OF6|1|YA|U|2423
6OF6|1|YA|C|2424
6OF6|1|YA|A|2425
6OF6|1|YA|A|2426
6OF6|1|YA|C|2427
6OF6|1|YA|G|2428
6OF6|1|YA|G|2429
6OF6|1|YA|A|2430
6OF6|1|YA|U|2431
6OF6|1|YA|A|2432
6OF6|1|YA|A|2433
6OF6|1|YA|A|2434
6OF6|1|YA|A|2435

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XW
Transfer RNA; tRNA
Chain Y0
50S ribosomal protein L27
Chain Y1
50S ribosomal protein L28
Chain Y6
50S ribosomal protein L33
Chain Y8
50S ribosomal protein L35
Chain YD
50S ribosomal protein L2
Chain YP
50S ribosomal protein L15

Coloring options:

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