3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
6ORD|1|RA|U|2076, 6ORD|1|RA|U|2390, 6ORD|1|RA|G|2428, 6ORD|1|RA|A|2430, 6ORD|1|RA|U|2431, 6ORD|1|RA|A|2434
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ORD|1|RA|U|2074
6ORD|1|RA|U|2075
6ORD|1|RA|U|2076
6ORD|1|RA|A|2077
*
6ORD|1|RA|U|2243
6ORD|1|RA|U|2244
6ORD|1|RA|U|2245
6ORD|1|RA|G|2246
*
6ORD|1|RA|C|2258
6ORD|1|RA|G|2259
*
6ORD|1|RA|C|2281
6ORD|1|RA|G|2282
6ORD|1|RA|C|2283
6ORD|1|RA|C|2284
*
6ORD|1|RA|G|2384
6ORD|1|RA|C|2385
6ORD|1|RA|C|2386
6ORD|1|RA|U|2387
6ORD|1|RA|A|2388
6ORD|1|RA|G|2389
6ORD|1|RA|U|2390
6ORD|1|RA|G|2391
6ORD|1|RA|A|2392
6ORD|1|RA|A|2393
6ORD|1|RA|C|2394
6ORD|1|RA|C|2395
*
6ORD|1|RA|G|2421
6ORD|1|RA|A|2422
6ORD|1|RA|U|2423
6ORD|1|RA|C|2424
6ORD|1|RA|A|2425
6ORD|1|RA|A|2426
6ORD|1|RA|C|2427
6ORD|1|RA|G|2428
6ORD|1|RA|G|2429
6ORD|1|RA|A|2430
6ORD|1|RA|U|2431
6ORD|1|RA|A|2432
6ORD|1|RA|A|2433
6ORD|1|RA|A|2434
6ORD|1|RA|A|2435

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain R1
50S ribosomal protein L28
Chain R6
50S ribosomal protein L33
Chain R8
50S ribosomal protein L35
Chain RD
50S ribosomal protein L2
Chain RP
50S ribosomal protein L15

Coloring options:

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