J6_6OTR_001
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
- Length
- 36 nucleotides
- Bulged bases
- 6OTR|1|RA|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OTR|1|RA|G|45
6OTR|1|RA|C|46
*
6OTR|1|RA|G|179
6OTR|1|RA|G|180
6OTR|1|RA|A|181
6OTR|1|RA|A|182
6OTR|1|RA|C|183
*
6OTR|1|RA|G|214
6OTR|1|RA|G|215
6OTR|1|RA|A|216
6OTR|1|RA|G|217
6OTR|1|RA|A|218
6OTR|1|RA|G|219
6OTR|1|RA|G|220
6OTR|1|RA|A|221
6OTR|1|RA|A|222
6OTR|1|RA|A|223
6OTR|1|RA|G|224
*
6OTR|1|RA|C|231
6OTR|1|RA|G|232
6OTR|1|RA|A|233
6OTR|1|RA|C|234
6OTR|1|RA|U|235
*
6OTR|1|RA|A|262
6OTR|1|RA|C|263
6OTR|1|RA|C|264
6OTR|1|RA|A|265
6OTR|1|RA|G|266
*
6OTR|1|RA|C|426
6OTR|1|RA|U|427
6OTR|1|RA|A|428
6OTR|1|RA|A|429
6OTR|1|RA|G|430
6OTR|1|RA|U|431
6OTR|1|RA|A|432
6OTR|1|RA|C|433
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R7
- 50S ribosomal protein L34
Coloring options: