J6_6OXA_003
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
- Length
- 36 nucleotides
- Bulged bases
- 6OXA|1|YA|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OXA|1|YA|G|45
6OXA|1|YA|C|46
*
6OXA|1|YA|G|179
6OXA|1|YA|G|180
6OXA|1|YA|A|181
6OXA|1|YA|A|182
6OXA|1|YA|C|183
*
6OXA|1|YA|G|214
6OXA|1|YA|G|215
6OXA|1|YA|A|216
6OXA|1|YA|G|217
6OXA|1|YA|A|218
6OXA|1|YA|G|219
6OXA|1|YA|G|220
6OXA|1|YA|A|221
6OXA|1|YA|A|222
6OXA|1|YA|A|223
6OXA|1|YA|G|224
*
6OXA|1|YA|C|231
6OXA|1|YA|G|232
6OXA|1|YA|A|233
6OXA|1|YA|C|234
6OXA|1|YA|U|235
*
6OXA|1|YA|A|262
6OXA|1|YA|C|263
6OXA|1|YA|C|264
6OXA|1|YA|A|265
6OXA|1|YA|G|266
*
6OXA|1|YA|C|426
6OXA|1|YA|U|427
6OXA|1|YA|A|428
6OXA|1|YA|A|429
6OXA|1|YA|G|430
6OXA|1|YA|U|431
6OXA|1|YA|A|432
6OXA|1|YA|C|433
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
Coloring options: