J6_6PC5_001

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6PC5|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC5|1|I|G|45
6PC5|1|I|G|46
*
6PC5|1|I|C|179
6PC5|1|I|G|180
6PC5|1|I|A|181
6PC5|1|I|A|182
6PC5|1|I|C|183
*
6PC5|1|I|G|214
6PC5|1|I|G|215
6PC5|1|I|A|216
6PC5|1|I|A|217
6PC5|1|I|A|218
6PC5|1|I|A|219
6PC5|1|I|G|220
6PC5|1|I|A|221
6PC5|1|I|A|222
6PC5|1|I|A|223
6PC5|1|I|U|224
*
6PC5|1|I|A|231
6PC5|1|I|G|232
6PC5|1|I|A|233
6PC5|1|I|U|234
6PC5|1|I|U|235
*
6PC5|1|I|A|262
6PC5|1|I|G|263
6PC5|1|I|C|264
6PC5|1|I|A|265
6PC5|1|I|G|266
*
6PC5|1|I|C|426
6PC5|1|I|U|427
6PC5|1|I|A|428
6PC5|1|I|A|429
6PC5|1|I|A|430
6PC5|1|I|U|431
6PC5|1|I|A|432
6PC5|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains