3D structure

PDB id
6PC6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 47
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
Length
36 nucleotides
Bulged bases
6PC6|1|I|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6PC6|1|I|G|45
6PC6|1|I|G|46
*
6PC6|1|I|C|179
6PC6|1|I|G|180
6PC6|1|I|A|181
6PC6|1|I|A|182
6PC6|1|I|C|183
*
6PC6|1|I|G|214
6PC6|1|I|G|215
6PC6|1|I|A|216
6PC6|1|I|A|217
6PC6|1|I|A|218
6PC6|1|I|A|219
6PC6|1|I|G|220
6PC6|1|I|A|221
6PC6|1|I|A|222
6PC6|1|I|A|223
6PC6|1|I|U|224
*
6PC6|1|I|A|231
6PC6|1|I|G|232
6PC6|1|I|A|233
6PC6|1|I|U|234
6PC6|1|I|U|235
*
6PC6|1|I|A|262
6PC6|1|I|G|263
6PC6|1|I|C|264
6PC6|1|I|A|265
6PC6|1|I|G|266
*
6PC6|1|I|C|426
6PC6|1|I|U|427
6PC6|1|I|A|428
6PC6|1|I|A|429
6PC6|1|I|A|430
6PC6|1|I|U|431
6PC6|1|I|A|432
6PC6|1|I|C|433

Current chains

Chain I
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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