3D structure

PDB id
6PC7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 46
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
6PC7|1|I|U|2076, 6PC7|1|I|A|2388, 6PC7|1|I|U|2390, 6PC7|1|I|G|2428, 6PC7|1|I|A|2430, 6PC7|1|I|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6PC7|1|I|U|2074
6PC7|1|I|U|2075
6PC7|1|I|U|2076
6PC7|1|I|A|2077
*
6PC7|1|I|U|2243
6PC7|1|I|U|2244
6PC7|1|I|U|2245
6PC7|1|I|G|2246
*
6PC7|1|I|C|2258
6PC7|1|I|U|2259
*
6PC7|1|I|A|2281
6PC7|1|I|G|2282
6PC7|1|I|C|2283
6PC7|1|I|A|2284
*
6PC7|1|I|U|2384
6PC7|1|I|C|2385
6PC7|1|I|A|2386
6PC7|1|I|U|2387
6PC7|1|I|A|2388
6PC7|1|I|G|2389
6PC7|1|I|U|2390
6PC7|1|I|G|2391
6PC7|1|I|A|2392
6PC7|1|I|U|2393
6PC7|1|I|C|2394
6PC7|1|I|C|2395
*
6PC7|1|I|G|2421
6PC7|1|I|C|2422
6PC7|1|I|U|2423
6PC7|1|I|C|2424
6PC7|1|I|A|2425
6PC7|1|I|A|2426
6PC7|1|I|C|2427
6PC7|1|I|G|2428
6PC7|1|I|G|2429
6PC7|1|I|A|2430
6PC7|1|I|U|2431
6PC7|1|I|A|2432
6PC7|1|I|A|2433
6PC7|1|I|A|2434
6PC7|1|I|A|2435

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L2
Chain L
50S ribosomal protein L15

Coloring options:

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