J6_6PC8_002

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6PC8|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC8|1|I|G|45
6PC8|1|I|G|46
*
6PC8|1|I|C|179
6PC8|1|I|G|180
6PC8|1|I|A|181
6PC8|1|I|A|182
6PC8|1|I|C|183
*
6PC8|1|I|G|214
6PC8|1|I|G|215
6PC8|1|I|A|216
6PC8|1|I|A|217
6PC8|1|I|A|218
6PC8|1|I|A|219
6PC8|1|I|G|220
6PC8|1|I|A|221
6PC8|1|I|A|222
6PC8|1|I|A|223
6PC8|1|I|U|224
*
6PC8|1|I|A|231
6PC8|1|I|G|232
6PC8|1|I|A|233
6PC8|1|I|U|234
6PC8|1|I|U|235
*
6PC8|1|I|A|262
6PC8|1|I|G|263
6PC8|1|I|C|264
6PC8|1|I|A|265
6PC8|1|I|G|266
*
6PC8|1|I|C|426
6PC8|1|I|U|427
6PC8|1|I|A|428
6PC8|1|I|A|429
6PC8|1|I|A|430
6PC8|1|I|U|431
6PC8|1|I|A|432
6PC8|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains