J6_6PCH_002

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAAG

Length

43 nucleotides

Bulged bases

6PCH|1|I|U|2076, 6PCH|1|I|A|2388, 6PCH|1|I|G|2428, 6PCH|1|I|A|2430, 6PCH|1|I|U|2431, 6PCH|1|I|A|2434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCH|1|I|C|2073
6PCH|1|I|U|2074
6PCH|1|I|U|2075
6PCH|1|I|U|2076
6PCH|1|I|A|2077
*
6PCH|1|I|U|2243
6PCH|1|I|U|2244
6PCH|1|I|U|2245
6PCH|1|I|G|2246
*
6PCH|1|I|C|2258
6PCH|1|I|U|2259
*
6PCH|1|I|A|2281
6PCH|1|I|G|2282
6PCH|1|I|C|2283
6PCH|1|I|A|2284
*
6PCH|1|I|U|2384
6PCH|1|I|C|2385
6PCH|1|I|A|2386
6PCH|1|I|U|2387
6PCH|1|I|A|2388
6PCH|1|I|G|2389
6PCH|1|I|U|2390
6PCH|1|I|G|2391
6PCH|1|I|A|2392
6PCH|1|I|U|2393
6PCH|1|I|C|2394
6PCH|1|I|C|2395
*
6PCH|1|I|G|2421
6PCH|1|I|C|2422
6PCH|1|I|U|2423
6PCH|1|I|C|2424
6PCH|1|I|A|2425
6PCH|1|I|A|2426
6PCH|1|I|C|2427
6PCH|1|I|G|2428
6PCH|1|I|G|2429
6PCH|1|I|A|2430
6PCH|1|I|U|2431
6PCH|1|I|A|2432
6PCH|1|I|A|2433
6PCH|1|I|A|2434
6PCH|1|I|A|2435
6PCH|1|I|G|2436

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15