J6_6PCQ_001

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

6PCQ|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCQ|1|I|G|45
6PCQ|1|I|G|46
*
6PCQ|1|I|C|179
6PCQ|1|I|G|180
6PCQ|1|I|A|181
6PCQ|1|I|A|182
6PCQ|1|I|C|183
6PCQ|1|I|C|184
*
6PCQ|1|I|G|212
6PCQ|1|I|A|213
6PCQ|1|I|G|214
6PCQ|1|I|G|215
6PCQ|1|I|A|216
6PCQ|1|I|A|217
6PCQ|1|I|A|218
6PCQ|1|I|A|219
6PCQ|1|I|G|220
6PCQ|1|I|A|221
6PCQ|1|I|A|222
6PCQ|1|I|A|223
6PCQ|1|I|U|224
*
6PCQ|1|I|A|231
6PCQ|1|I|G|232
6PCQ|1|I|A|233
6PCQ|1|I|U|234
6PCQ|1|I|U|235
*
6PCQ|1|I|A|262
6PCQ|1|I|G|263
6PCQ|1|I|C|264
6PCQ|1|I|A|265
6PCQ|1|I|G|266
*
6PCQ|1|I|C|426
6PCQ|1|I|U|427
6PCQ|1|I|A|428
6PCQ|1|I|A|429
6PCQ|1|I|A|430
6PCQ|1|I|U|431
6PCQ|1|I|A|432
6PCQ|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains