J6_6PCQ_002

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

6PCQ|1|I|U|2076, 6PCQ|1|I|A|2388, 6PCQ|1|I|U|2390, 6PCQ|1|I|G|2428, 6PCQ|1|I|A|2430, 6PCQ|1|I|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCQ|1|I|U|2074
6PCQ|1|I|U|2075
6PCQ|1|I|U|2076
6PCQ|1|I|A|2077
*
6PCQ|1|I|U|2243
6PCQ|1|I|U|2244
6PCQ|1|I|U|2245
6PCQ|1|I|G|2246
*
6PCQ|1|I|C|2258
6PCQ|1|I|U|2259
*
6PCQ|1|I|A|2281
6PCQ|1|I|G|2282
6PCQ|1|I|C|2283
6PCQ|1|I|A|2284
*
6PCQ|1|I|U|2384
6PCQ|1|I|C|2385
6PCQ|1|I|A|2386
6PCQ|1|I|U|2387
6PCQ|1|I|A|2388
6PCQ|1|I|G|2389
6PCQ|1|I|U|2390
6PCQ|1|I|G|2391
6PCQ|1|I|A|2392
6PCQ|1|I|U|2393
6PCQ|1|I|C|2394
6PCQ|1|I|C|2395
*
6PCQ|1|I|G|2421
6PCQ|1|I|C|2422
6PCQ|1|I|U|2423
6PCQ|1|I|C|2424
6PCQ|1|I|A|2425
6PCQ|1|I|A|2426
6PCQ|1|I|C|2427
6PCQ|1|I|G|2428
6PCQ|1|I|G|2429
6PCQ|1|I|A|2430
6PCQ|1|I|U|2431
6PCQ|1|I|A|2432
6PCQ|1|I|A|2433
6PCQ|1|I|A|2434
6PCQ|1|I|A|2435

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15