J6_6PCT_002

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

6PCT|1|I|U|2076, 6PCT|1|I|A|2388, 6PCT|1|I|U|2390, 6PCT|1|I|G|2428, 6PCT|1|I|A|2430, 6PCT|1|I|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCT|1|I|U|2074
6PCT|1|I|U|2075
6PCT|1|I|U|2076
6PCT|1|I|A|2077
*
6PCT|1|I|U|2243
6PCT|1|I|U|2244
6PCT|1|I|U|2245
6PCT|1|I|G|2246
*
6PCT|1|I|C|2258
6PCT|1|I|U|2259
*
6PCT|1|I|A|2281
6PCT|1|I|G|2282
6PCT|1|I|C|2283
6PCT|1|I|A|2284
*
6PCT|1|I|U|2384
6PCT|1|I|C|2385
6PCT|1|I|A|2386
6PCT|1|I|U|2387
6PCT|1|I|A|2388
6PCT|1|I|G|2389
6PCT|1|I|U|2390
6PCT|1|I|G|2391
6PCT|1|I|A|2392
6PCT|1|I|U|2393
6PCT|1|I|C|2394
6PCT|1|I|C|2395
*
6PCT|1|I|G|2421
6PCT|1|I|C|2422
6PCT|1|I|U|2423
6PCT|1|I|C|2424
6PCT|1|I|A|2425
6PCT|1|I|A|2426
6PCT|1|I|C|2427
6PCT|1|I|G|2428
6PCT|1|I|G|2429
6PCT|1|I|A|2430
6PCT|1|I|U|2431
6PCT|1|I|A|2432
6PCT|1|I|A|2433
6PCT|1|I|A|2434
6PCT|1|I|A|2435

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15