J6_6PJ6_001

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6PJ6|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PJ6|1|I|G|45
6PJ6|1|I|G|46
*
6PJ6|1|I|C|179
6PJ6|1|I|G|180
6PJ6|1|I|A|181
6PJ6|1|I|A|182
6PJ6|1|I|C|183
*
6PJ6|1|I|G|214
6PJ6|1|I|G|215
6PJ6|1|I|A|216
6PJ6|1|I|A|217
6PJ6|1|I|A|218
6PJ6|1|I|A|219
6PJ6|1|I|G|220
6PJ6|1|I|A|221
6PJ6|1|I|A|222
6PJ6|1|I|A|223
6PJ6|1|I|U|224
*
6PJ6|1|I|A|231
6PJ6|1|I|G|232
6PJ6|1|I|A|233
6PJ6|1|I|U|234
6PJ6|1|I|U|235
*
6PJ6|1|I|A|262
6PJ6|1|I|G|263
6PJ6|1|I|C|264
6PJ6|1|I|A|265
6PJ6|1|I|G|266
*
6PJ6|1|I|C|426
6PJ6|1|I|U|427
6PJ6|1|I|A|428
6PJ6|1|I|A|429
6PJ6|1|I|A|430
6PJ6|1|I|U|431
6PJ6|1|I|A|432
6PJ6|1|I|C|433

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34