J6_6PPF_001
3D structure
- PDB id
- 6PPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 45SRbgA ribosomal particle class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GC*GCAGAC*GGAAGAGAAAG*CGAUU*AUCAG*CUAAAUAC
- Length
- 37 nucleotides
- Bulged bases
- 6PPF|1|A|G|184, 6PPF|1|A|A|226
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6PPF|1|A|G|45
6PPF|1|A|C|46
*
6PPF|1|A|G|181
6PPF|1|A|C|182
6PPF|1|A|A|183
6PPF|1|A|G|184
6PPF|1|A|A|185
6PPF|1|A|C|186
*
6PPF|1|A|G|217
6PPF|1|A|G|218
6PPF|1|A|A|219
6PPF|1|A|A|220
6PPF|1|A|G|221
6PPF|1|A|A|222
6PPF|1|A|G|223
6PPF|1|A|A|224
6PPF|1|A|A|225
6PPF|1|A|A|226
6PPF|1|A|G|227
*
6PPF|1|A|C|234
6PPF|1|A|G|235
6PPF|1|A|A|236
6PPF|1|A|U|237
6PPF|1|A|U|238
*
6PPF|1|A|A|265
6PPF|1|A|U|266
6PPF|1|A|C|267
6PPF|1|A|A|268
6PPF|1|A|G|269
*
6PPF|1|A|C|473
6PPF|1|A|U|474
6PPF|1|A|A|475
6PPF|1|A|A|476
6PPF|1|A|A|477
6PPF|1|A|U|478
6PPF|1|A|A|479
6PPF|1|A|C|480
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain d
- 50S ribosomal protein L34
Coloring options: