J6_6PPF_002

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCUUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

6PPF|1|A|U|2105, 6PPF|1|A|U|2419, 6PPF|1|A|G|2457, 6PPF|1|A|A|2459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PPF|1|A|U|2103
6PPF|1|A|U|2104
6PPF|1|A|U|2105
6PPF|1|A|A|2106
*
6PPF|1|A|U|2272
6PPF|1|A|U|2273
6PPF|1|A|U|2274
6PPF|1|A|G|2275
*
6PPF|1|A|C|2287
6PPF|1|A|G|2288
*
6PPF|1|A|C|2310
6PPF|1|A|G|2311
6PPF|1|A|C|2312
6PPF|1|A|C|2313
*
6PPF|1|A|G|2413
6PPF|1|A|C|2414
6PPF|1|A|U|2415
6PPF|1|A|U|2416
6PPF|1|A|A|2417
6PPF|1|A|G|2418
6PPF|1|A|U|2419
6PPF|1|A|G|2420
6PPF|1|A|A|2421
6PPF|1|A|U|2422
6PPF|1|A|C|2423
6PPF|1|A|C|2424
*
6PPF|1|A|G|2450
6PPF|1|A|C|2451
6PPF|1|A|U|2452
6PPF|1|A|C|2453
6PPF|1|A|A|2454
6PPF|1|A|A|2455
6PPF|1|A|C|2456
6PPF|1|A|G|2457
6PPF|1|A|G|2458
6PPF|1|A|A|2459
6PPF|1|A|U|2460
6PPF|1|A|A|2461
6PPF|1|A|A|2462
6PPF|1|A|A|2463
6PPF|1|A|A|2464

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain V

50S ribosomal protein L27