J6_6Q8Y_001
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|A|67, 6Q8Y|1|BQ|U|329, 6Q8Y|1|BS|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q8Y|1|BQ|G|22
6Q8Y|1|BQ|A|23
6Q8Y|1|BQ|G|24
6Q8Y|1|BQ|U|25
6Q8Y|1|BQ|A|26
6Q8Y|1|BQ|C|27
*
6Q8Y|1|BQ|G|58
6Q8Y|1|BQ|G|59
6Q8Y|1|BQ|A|60
6Q8Y|1|BQ|A|61
6Q8Y|1|BQ|A|62
6Q8Y|1|BQ|A|63
6Q8Y|1|BQ|G|64
6Q8Y|1|BQ|A|65
6Q8Y|1|BQ|A|66
6Q8Y|1|BQ|A|67
6Q8Y|1|BQ|C|68
*
6Q8Y|1|BQ|G|75
6Q8Y|1|BQ|G|76
6Q8Y|1|BQ|A|77
6Q8Y|1|BQ|U|78
6Q8Y|1|BQ|U|79
*
6Q8Y|1|BQ|A|106
6Q8Y|1|BQ|A|107
6Q8Y|1|BQ|A|108
6Q8Y|1|BQ|A|109
6Q8Y|1|BQ|G|110
*
6Q8Y|1|BQ|C|321
6Q8Y|1|BQ|U|322
6Q8Y|1|BQ|A|323
6Q8Y|1|BQ|A|324
6Q8Y|1|BQ|A|325
6Q8Y|1|BQ|U|326
6Q8Y|1|BQ|A|327
6Q8Y|1|BQ|U|328
6Q8Y|1|BQ|U|329
6Q8Y|1|BQ|G|330
6Q8Y|1|BQ|G|331
*
6Q8Y|1|BS|C|32
6Q8Y|1|BS|A|33
6Q8Y|1|BS|U|34
6Q8Y|1|BS|C|35
Current chains
- Chain BQ
- 25S ribosomal RNA
- Chain BS
- 5.8S ribosomal RNA
Nearby chains
- Chain AC
- 60S ribosomal protein L36-A
- Chain AF
- 60S ribosomal protein L37-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain BE
- 60S ribosomal protein L4-A
- Chain BP
- 60S ribosomal protein L35-A
Coloring options: