J6_6Q8Y_002
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|G|2418, 6Q8Y|1|BQ|C|2760, 6Q8Y|1|BQ|A|2799, 6Q8Y|1|BQ|A|2801, 6Q8Y|1|BQ|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q8Y|1|BQ|U|2416
6Q8Y|1|BQ|U|2417
6Q8Y|1|BQ|G|2418
6Q8Y|1|BQ|A|2419
*
6Q8Y|1|BQ|U|2611
6Q8Y|1|BQ|U|2612
6Q8Y|1|BQ|U|2613
6Q8Y|1|BQ|G|2614
*
6Q8Y|1|BQ|C|2627
6Q8Y|1|BQ|A|2628
*
6Q8Y|1|BQ|U|2650
6Q8Y|1|BQ|G|2651
6Q8Y|1|BQ|U|2652
6Q8Y|1|BQ|C|2653
*
6Q8Y|1|BQ|G|2754
6Q8Y|1|BQ|C|2755
6Q8Y|1|BQ|C|2756
6Q8Y|1|BQ|U|2757
6Q8Y|1|BQ|A|2758
6Q8Y|1|BQ|U|2759
6Q8Y|1|BQ|C|2760
6Q8Y|1|BQ|G|2761
6Q8Y|1|BQ|A|2762
6Q8Y|1|BQ|U|2763
6Q8Y|1|BQ|C|2764
6Q8Y|1|BQ|C|2765
*
6Q8Y|1|BQ|G|2793
6Q8Y|1|BQ|G|2794
6Q8Y|1|BQ|U|2795
6Q8Y|1|BQ|G|2796
6Q8Y|1|BQ|C|2797
6Q8Y|1|BQ|C|2798
6Q8Y|1|BQ|A|2799
6Q8Y|1|BQ|G|2800
6Q8Y|1|BQ|A|2801
6Q8Y|1|BQ|A|2802
6Q8Y|1|BQ|A|2803
6Q8Y|1|BQ|A|2804
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AP
- 60S ribosomal protein L42-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
- Chain AV
- 60S ribosomal protein L29
- Chain AW
- 60S ribosomal protein L2-A
- Chain BB
- 60S ribosomal protein L18-A
- Chain BJ
- 60S ribosomal protein L21-A
- Chain m
- Transfer RNA; tRNA
Coloring options: