J6_6Q9A_001
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
- Length
- 36 nucleotides
- Bulged bases
- 6Q9A|1|1|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q9A|1|1|G|45
6Q9A|1|1|G|46
*
6Q9A|1|1|C|179
6Q9A|1|1|G|180
6Q9A|1|1|A|181
6Q9A|1|1|A|182
6Q9A|1|1|C|183
*
6Q9A|1|1|G|214
6Q9A|1|1|G|215
6Q9A|1|1|A|216
6Q9A|1|1|A|217
6Q9A|1|1|A|218
6Q9A|1|1|A|219
6Q9A|1|1|G|220
6Q9A|1|1|A|221
6Q9A|1|1|A|222
6Q9A|1|1|A|223
6Q9A|1|1|U|224
*
6Q9A|1|1|A|231
6Q9A|1|1|G|232
6Q9A|1|1|A|233
6Q9A|1|1|U|234
6Q9A|1|1|U|235
*
6Q9A|1|1|A|262
6Q9A|1|1|G|263
6Q9A|1|1|C|264
6Q9A|1|1|A|265
6Q9A|1|1|G|266
*
6Q9A|1|1|C|426
6Q9A|1|1|U|427
6Q9A|1|1|A|428
6Q9A|1|1|A|429
6Q9A|1|1|A|430
6Q9A|1|1|U|431
6Q9A|1|1|A|432
6Q9A|1|1|C|433
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L34
Coloring options: