J6_6QNQ_003

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6QNQ|1|1H|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QNQ|1|1H|G|45
6QNQ|1|1H|C|46
*
6QNQ|1|1H|G|179
6QNQ|1|1H|G|180
6QNQ|1|1H|A|181
6QNQ|1|1H|A|182
6QNQ|1|1H|C|183
*
6QNQ|1|1H|G|214
6QNQ|1|1H|G|215
6QNQ|1|1H|A|216
6QNQ|1|1H|G|217
6QNQ|1|1H|A|218
6QNQ|1|1H|G|219
6QNQ|1|1H|G|220
6QNQ|1|1H|A|221
6QNQ|1|1H|A|222
6QNQ|1|1H|A|223
6QNQ|1|1H|G|224
*
6QNQ|1|1H|C|231
6QNQ|1|1H|G|232
6QNQ|1|1H|A|233
6QNQ|1|1H|C|234
6QNQ|1|1H|U|235
*
6QNQ|1|1H|A|262
6QNQ|1|1H|C|263
6QNQ|1|1H|C|264
6QNQ|1|1H|A|265
6QNQ|1|1H|G|266
*
6QNQ|1|1H|C|426
6QNQ|1|1H|U|427
6QNQ|1|1H|A|428
6QNQ|1|1H|A|429
6QNQ|1|1H|G|430
6QNQ|1|1H|U|431
6QNQ|1|1H|A|432
6QNQ|1|1H|C|433

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain P8

50S ribosomal protein L34