J6_6QUL_001

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6QUL|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QUL|1|A|G|45
6QUL|1|A|G|46
*
6QUL|1|A|C|179
6QUL|1|A|G|180
6QUL|1|A|A|181
6QUL|1|A|A|182
6QUL|1|A|C|183
*
6QUL|1|A|G|214
6QUL|1|A|G|215
6QUL|1|A|A|216
6QUL|1|A|A|217
6QUL|1|A|A|218
6QUL|1|A|A|219
6QUL|1|A|G|220
6QUL|1|A|A|221
6QUL|1|A|A|222
6QUL|1|A|A|223
6QUL|1|A|U|224
*
6QUL|1|A|A|231
6QUL|1|A|G|232
6QUL|1|A|A|233
6QUL|1|A|U|234
6QUL|1|A|U|235
*
6QUL|1|A|A|262
6QUL|1|A|G|263
6QUL|1|A|C|264
6QUL|1|A|A|265
6QUL|1|A|G|266
*
6QUL|1|A|C|426
6QUL|1|A|U|427
6QUL|1|A|A|428
6QUL|1|A|A|429
6QUL|1|A|A|430
6QUL|1|A|U|431
6QUL|1|A|A|432
6QUL|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34