3D structure

PDB id
6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
Length
27 nucleotides
Bulged bases
6R5Q|1|5|C|1501
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6R5Q|1|5|C|1352
6R5Q|1|5|G|1353
6R5Q|1|5|A|1354
6R5Q|1|5|G|1355
*
6R5Q|1|5|C|1384
6R5Q|1|5|G|1385
6R5Q|1|5|C|1386
6R5Q|1|5|A|1387
6R5Q|1|5|A|1388
*
6R5Q|1|5|U|1395
6R5Q|1|5|G|1396
6R5Q|1|5|A|1397
6R5Q|1|5|A|1398
6R5Q|1|5|G|1399
*
6R5Q|1|5|C|1418
6R5Q|1|5|G|1419
6R5Q|1|5|A|1420
6R5Q|1|5|G|1421
*
6R5Q|1|5|C|1464
6R5Q|1|5|G|1465
6R5Q|1|5|G|1466
*
6R5Q|1|5|C|1499
6R5Q|1|5|A|1500
6R5Q|1|5|C|1501
6R5Q|1|5|G|1502
6R5Q|1|5|A|1503
6R5Q|1|5|G|1504

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain C
uL4
Chain L
60S ribosomal protein L13
Chain Q
eL18
Chain a
uL15
Chain b
eL29
Chain i
60S ribosomal protein L36

Coloring options:

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