3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
Length
38 nucleotides
Bulged bases
6R6G|1|5|A|66, 6R6G|1|8|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6R6G|1|5|G|21
6R6G|1|5|G|22
6R6G|1|5|C|23
6R6G|1|5|G|24
6R6G|1|5|A|25
6R6G|1|5|C|26
*
6R6G|1|5|G|57
6R6G|1|5|G|58
6R6G|1|5|A|59
6R6G|1|5|A|60
6R6G|1|5|A|61
6R6G|1|5|A|62
6R6G|1|5|G|63
6R6G|1|5|A|64
6R6G|1|5|A|65
6R6G|1|5|A|66
6R6G|1|5|C|67
*
6R6G|1|5|G|74
6R6G|1|5|G|75
6R6G|1|5|A|76
6R6G|1|5|U|77
6R6G|1|5|U|78
*
6R6G|1|5|A|105
6R6G|1|5|A|106
6R6G|1|5|G|107
6R6G|1|5|A|108
6R6G|1|5|G|109
*
6R6G|1|5|C|326
6R6G|1|5|U|327
6R6G|1|5|A|328
6R6G|1|5|A|329
6R6G|1|5|A|330
6R6G|1|5|U|331
6R6G|1|5|A|332
6R6G|1|5|C|333
*
6R6G|1|8|G|33
6R6G|1|8|U|34
6R6G|1|8|C|35

Current chains

Chain 5
28S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain L
60S ribosomal protein L13
Chain N
Ribosomal protein L15
Chain h
uL29
Chain i
60S ribosomal protein L36
Chain j
Ribosomal protein L37

Coloring options:

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