J6_6R6G_003
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 6R6G|1|5|G|2620, 6R6G|1|5|A|2946, 6R6G|1|5|A|2948, 6R6G|1|5|A|2949, 6R6G|1|5|A|2950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6G|1|5|U|2618
6R6G|1|5|U|2619
6R6G|1|5|G|2620
6R6G|1|5|A|2621
*
6R6G|1|5|U|2758
6R6G|1|5|U|2759
6R6G|1|5|U|2760
6R6G|1|5|G|2761
*
6R6G|1|5|C|2774
6R6G|1|5|A|2775
*
6R6G|1|5|U|2797
6R6G|1|5|G|2798
6R6G|1|5|U|2799
6R6G|1|5|C|2800
*
6R6G|1|5|G|2901
6R6G|1|5|C|2902
6R6G|1|5|C|2903
6R6G|1|5|U|2904
6R6G|1|5|C|2905
6R6G|1|5|A|2906
6R6G|1|5|C|2907
6R6G|1|5|G|2908
6R6G|1|5|A|2909
6R6G|1|5|U|2910
6R6G|1|5|C|2911
6R6G|1|5|C|2912
*
6R6G|1|5|G|2940
6R6G|1|5|G|2941
6R6G|1|5|U|2942
6R6G|1|5|G|2943
6R6G|1|5|U|2944
6R6G|1|5|C|2945
6R6G|1|5|A|2946
6R6G|1|5|G|2947
6R6G|1|5|A|2948
6R6G|1|5|A|2949
6R6G|1|5|A|2950
6R6G|1|5|A|2951
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain N
- Ribosomal protein L15
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- eL29
- Chain o
- eL42
Coloring options: