J6_6R7Q_001
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 6R7Q|1|5|A|66, 6R7Q|1|8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R7Q|1|5|G|21
6R7Q|1|5|G|22
6R7Q|1|5|C|23
6R7Q|1|5|G|24
6R7Q|1|5|A|25
6R7Q|1|5|C|26
*
6R7Q|1|5|G|57
6R7Q|1|5|G|58
6R7Q|1|5|A|59
6R7Q|1|5|A|60
6R7Q|1|5|A|61
6R7Q|1|5|A|62
6R7Q|1|5|G|63
6R7Q|1|5|A|64
6R7Q|1|5|A|65
6R7Q|1|5|A|66
6R7Q|1|5|C|67
*
6R7Q|1|5|G|74
6R7Q|1|5|G|75
6R7Q|1|5|A|76
6R7Q|1|5|U|77
6R7Q|1|5|U|78
*
6R7Q|1|5|A|105
6R7Q|1|5|A|106
6R7Q|1|5|G|107
6R7Q|1|5|A|108
6R7Q|1|5|G|109
*
6R7Q|1|5|C|332
6R7Q|1|5|U|333
6R7Q|1|5|A|334
6R7Q|1|5|A|335
6R7Q|1|5|A|336
6R7Q|1|5|U|337
6R7Q|1|5|A|338
6R7Q|1|5|C|339
*
6R7Q|1|8|G|33
6R7Q|1|8|U|34
6R7Q|1|8|C|35
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain h
- uL29
- Chain i
- 60S ribosomal protein L36
- Chain j
- Ribosomal protein L37
Coloring options: