J6_6R84_001

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

6R84|1|1|A|67, 6R84|1|1|U|329, 6R84|1|4|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R84|1|1|G|22
6R84|1|1|A|23
6R84|1|1|G|24
6R84|1|1|U|25
6R84|1|1|A|26
6R84|1|1|C|27
*
6R84|1|1|G|58
6R84|1|1|G|59
6R84|1|1|A|60
6R84|1|1|A|61
6R84|1|1|A|62
6R84|1|1|A|63
6R84|1|1|G|64
6R84|1|1|A|65
6R84|1|1|A|66
6R84|1|1|A|67
6R84|1|1|C|68
*
6R84|1|1|G|75
6R84|1|1|G|76
6R84|1|1|A|77
6R84|1|1|U|78
6R84|1|1|U|79
*
6R84|1|1|A|106
6R84|1|1|A|107
6R84|1|1|A|108
6R84|1|1|A|109
6R84|1|1|G|110
*
6R84|1|1|C|321
6R84|1|1|U|322
6R84|1|1|A|323
6R84|1|1|A|324
6R84|1|1|A|325
6R84|1|1|U|326
6R84|1|1|A|327
6R84|1|1|U|328
6R84|1|1|U|329
6R84|1|1|G|330
6R84|1|1|G|331
*
6R84|1|4|C|32
6R84|1|4|A|33
6R84|1|4|U|34
6R84|1|4|C|35

Current chains

Chain 1

25S rRNA

Chain 4

5.8S rRNA

Nearby chains

Chain G

60S ribosomal protein L4-A

Chain N

60S ribosomal protein L13-A

Chain j

60S ribosomal protein L35-A

Chain k

60S ribosomal protein L36-A

Chain l

60S ribosomal protein L37-A

Chain p

60S ribosomal protein L15-A