J6_6R87_001
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAGUACC*GAGGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 45 nucleotides
- Bulged bases
- 6R87|1|1|A|67, 6R87|1|1|U|329, 6R87|1|4|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R87|1|1|G|22
6R87|1|1|A|23
6R87|1|1|G|24
6R87|1|1|U|25
6R87|1|1|A|26
6R87|1|1|C|27
6R87|1|1|C|28
*
6R87|1|1|G|56
6R87|1|1|A|57
6R87|1|1|G|58
6R87|1|1|G|59
6R87|1|1|A|60
6R87|1|1|A|61
6R87|1|1|A|62
6R87|1|1|A|63
6R87|1|1|G|64
6R87|1|1|A|65
6R87|1|1|A|66
6R87|1|1|A|67
6R87|1|1|C|68
*
6R87|1|1|G|75
6R87|1|1|G|76
6R87|1|1|A|77
6R87|1|1|U|78
6R87|1|1|U|79
*
6R87|1|1|A|106
6R87|1|1|A|107
6R87|1|1|A|108
6R87|1|1|A|109
6R87|1|1|G|110
*
6R87|1|1|C|321
6R87|1|1|U|322
6R87|1|1|A|323
6R87|1|1|A|324
6R87|1|1|A|325
6R87|1|1|U|326
6R87|1|1|A|327
6R87|1|1|U|328
6R87|1|1|U|329
6R87|1|1|G|330
6R87|1|1|G|331
*
6R87|1|4|C|32
6R87|1|4|A|33
6R87|1|4|U|34
6R87|1|4|C|35
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13-A
- Chain j
- 60S ribosomal protein L35-A
- Chain k
- 60S ribosomal protein L36-A
- Chain l
- 60S ribosomal protein L37-A
- Chain p
- 60S ribosomal protein L15-A
Coloring options: