J6_6RM3_003

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCUAGCGAUCC*GGUGAUUGAAAA

Length

38 nucleotides

Bulged bases

6RM3|1|L50|G|1779, 6RM3|1|L50|U|2068, 6RM3|1|L50|A|2070, 6RM3|1|L50|A|2071, 6RM3|1|L50|A|2072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RM3|1|L50|U|1777
6RM3|1|L50|U|1778
6RM3|1|L50|G|1779
6RM3|1|L50|A|1780
*
6RM3|1|L50|U|1886
6RM3|1|L50|U|1887
6RM3|1|L50|U|1888
6RM3|1|L50|G|1889
*
6RM3|1|L50|C|1902
6RM3|1|L50|A|1903
*
6RM3|1|L50|U|1925
6RM3|1|L50|G|1926
6RM3|1|L50|U|1927
6RM3|1|L50|C|1928
*
6RM3|1|L50|G|2028
6RM3|1|L50|C|2029
6RM3|1|L50|C|2030
6RM3|1|L50|U|2031
6RM3|1|L50|A|2032
6RM3|1|L50|G|2033
6RM3|1|L50|C|2034
6RM3|1|L50|G|2035
6RM3|1|L50|A|2036
6RM3|1|L50|U|2037
6RM3|1|L50|C|2038
6RM3|1|L50|C|2039
*
6RM3|1|L50|G|2062
6RM3|1|L50|G|2063
6RM3|1|L50|U|2064
6RM3|1|L50|G|2065
6RM3|1|L50|A|2066
6RM3|1|L50|U|2067
6RM3|1|L50|U|2068
6RM3|1|L50|G|2069
6RM3|1|L50|A|2070
6RM3|1|L50|A|2071
6RM3|1|L50|A|2072
6RM3|1|L50|A|2073

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LA0

uL2

Chain LAA

uL15

Chain LN0

eL15

Chain LNN

MDF2

Chain LOO

eL42

Chain LT0

eL21