J6_6S0K_001

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6S0K|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S0K|1|A|G|45
6S0K|1|A|G|46
*
6S0K|1|A|C|179
6S0K|1|A|G|180
6S0K|1|A|A|181
6S0K|1|A|A|182
6S0K|1|A|C|183
*
6S0K|1|A|G|214
6S0K|1|A|G|215
6S0K|1|A|A|216
6S0K|1|A|A|217
6S0K|1|A|A|218
6S0K|1|A|A|219
6S0K|1|A|G|220
6S0K|1|A|A|221
6S0K|1|A|A|222
6S0K|1|A|A|223
6S0K|1|A|U|224
*
6S0K|1|A|A|231
6S0K|1|A|G|232
6S0K|1|A|A|233
6S0K|1|A|U|234
6S0K|1|A|U|235
*
6S0K|1|A|A|262
6S0K|1|A|G|263
6S0K|1|A|C|264
6S0K|1|A|A|265
6S0K|1|A|G|266
*
6S0K|1|A|C|426
6S0K|1|A|U|427
6S0K|1|A|A|428
6S0K|1|A|A|429
6S0K|1|A|A|430
6S0K|1|A|U|431
6S0K|1|A|A|432
6S0K|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34