J6_6S47_001
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 6S47|1|AA|A|67, 6S47|1|AA|U|329, 6S47|1|AC|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S47|1|AA|G|22
6S47|1|AA|A|23
6S47|1|AA|G|24
6S47|1|AA|U|25
6S47|1|AA|A|26
6S47|1|AA|C|27
*
6S47|1|AA|G|58
6S47|1|AA|G|59
6S47|1|AA|A|60
6S47|1|AA|A|61
6S47|1|AA|A|62
6S47|1|AA|A|63
6S47|1|AA|G|64
6S47|1|AA|A|65
6S47|1|AA|A|66
6S47|1|AA|A|67
6S47|1|AA|C|68
*
6S47|1|AA|G|75
6S47|1|AA|G|76
6S47|1|AA|A|77
6S47|1|AA|U|78
6S47|1|AA|U|79
*
6S47|1|AA|A|106
6S47|1|AA|A|107
6S47|1|AA|A|108
6S47|1|AA|A|109
6S47|1|AA|G|110
*
6S47|1|AA|C|321
6S47|1|AA|U|322
6S47|1|AA|A|323
6S47|1|AA|A|324
6S47|1|AA|A|325
6S47|1|AA|U|326
6S47|1|AA|A|327
6S47|1|AA|U|328
6S47|1|AA|U|329
6S47|1|AA|G|330
6S47|1|AA|G|331
*
6S47|1|AC|C|32
6S47|1|AC|A|33
6S47|1|AC|U|34
6S47|1|AC|C|35
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L4-A
- Chain AN
- 60S ribosomal protein L13-A
- Chain AP
- 60S ribosomal protein L15-A
- Chain Aj
- 60S ribosomal protein L35-A
- Chain Ak
- 60S ribosomal protein L36-A
- Chain Al
- 60S ribosomal protein L37-A
Coloring options: