J6_6S47_002
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 6S47|1|AA|G|2418, 6S47|1|AA|A|2799, 6S47|1|AA|A|2801, 6S47|1|AA|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S47|1|AA|U|2416
6S47|1|AA|U|2417
6S47|1|AA|G|2418
6S47|1|AA|A|2419
*
6S47|1|AA|U|2611
6S47|1|AA|U|2612
6S47|1|AA|U|2613
6S47|1|AA|G|2614
*
6S47|1|AA|C|2627
6S47|1|AA|A|2628
*
6S47|1|AA|U|2650
6S47|1|AA|G|2651
6S47|1|AA|U|2652
6S47|1|AA|C|2653
*
6S47|1|AA|G|2754
6S47|1|AA|C|2755
6S47|1|AA|C|2756
6S47|1|AA|U|2757
6S47|1|AA|A|2758
6S47|1|AA|U|2759
6S47|1|AA|C|2760
6S47|1|AA|G|2761
6S47|1|AA|A|2762
6S47|1|AA|U|2763
6S47|1|AA|C|2764
6S47|1|AA|C|2765
*
6S47|1|AA|G|2793
6S47|1|AA|G|2794
6S47|1|AA|U|2795
6S47|1|AA|G|2796
6S47|1|AA|C|2797
6S47|1|AA|C|2798
6S47|1|AA|A|2799
6S47|1|AA|G|2800
6S47|1|AA|A|2801
6S47|1|AA|A|2802
6S47|1|AA|A|2803
6S47|1|AA|A|2804
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L2-A
- Chain AP
- 60S ribosomal protein L15-A
- Chain AS
- 60S ribosomal protein L18-A
- Chain AV
- 60S ribosomal protein L21-A
- Chain Ac
- 60S ribosomal protein L28
- Chain Ad
- 60S ribosomal protein L29
- Chain Aq
- 60S ribosomal protein L42-A
Coloring options: