J6_6SKG_001

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(5MC)*GGAAC*GGAAAAGAAA(OMG)*CGAUG*CACAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6SKG|1|BA|A|214

QA status

Modified nucleotides: 5MC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|G|54
6SKG|1|BA|5MC|55
*
6SKG|1|BA|G|170
6SKG|1|BA|G|171
6SKG|1|BA|A|172
6SKG|1|BA|A|173
6SKG|1|BA|C|174
*
6SKG|1|BA|G|205
6SKG|1|BA|G|206
6SKG|1|BA|A|207
6SKG|1|BA|A|208
6SKG|1|BA|A|209
6SKG|1|BA|A|210
6SKG|1|BA|G|211
6SKG|1|BA|A|212
6SKG|1|BA|A|213
6SKG|1|BA|A|214
6SKG|1|BA|OMG|215
*
6SKG|1|BA|C|222
6SKG|1|BA|G|223
6SKG|1|BA|A|224
6SKG|1|BA|U|225
6SKG|1|BA|G|226
*
6SKG|1|BA|C|253
6SKG|1|BA|A|254
6SKG|1|BA|C|255
6SKG|1|BA|A|256
6SKG|1|BA|G|257
*
6SKG|1|BA|C|466
6SKG|1|BA|U|467
6SKG|1|BA|A|468
6SKG|1|BA|A|469
6SKG|1|BA|A|470
6SKG|1|BA|U|471
6SKG|1|BA|A|472
6SKG|1|BA|C|473

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L15e

Chain Bh

50S ribosomal protein L37e

Chain Bo

Nucleic acid-binding protein, containing C2H2 zinc-finger