Loop J6_6SKG

3D structure

PDB id: 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.65 Å

Loop

Sequence: UUUA*UUUG*CA*UGCC*GCCUAGCGAACC*(OMG)AUGACAGAAAA
Length: 38 nucleotides
Bulged bases: 6SKG|1|BA|U|2188, 6SKG|1|BA|A|2494, 6SKG|1|BA|A|2534, 6SKG|1|BA|A|2536, 6SKG|1|BA|A|2537
QA status: Modified nucleotides: OMG

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6SKG|1|BA|U|2186
6SKG|1|BA|U|2187
6SKG|1|BA|U|2188
6SKG|1|BA|A|2189
*
6SKG|1|BA|U|2345
6SKG|1|BA|U|2346
6SKG|1|BA|U|2347
6SKG|1|BA|G|2348
*
6SKG|1|BA|C|2361
6SKG|1|BA|A|2362
*
6SKG|1|BA|U|2384
6SKG|1|BA|G|2385
6SKG|1|BA|C|2386
6SKG|1|BA|C|2387
*
6SKG|1|BA|G|2490
6SKG|1|BA|C|2491
6SKG|1|BA|C|2492
6SKG|1|BA|U|2493
6SKG|1|BA|A|2494
6SKG|1|BA|G|2495
6SKG|1|BA|C|2496
6SKG|1|BA|G|2497
6SKG|1|BA|A|2498
6SKG|1|BA|A|2499
6SKG|1|BA|C|2500
6SKG|1|BA|C|2501
*
6SKG|1|BA|OMG|2528
6SKG|1|BA|A|2529
6SKG|1|BA|U|2530
6SKG|1|BA|G|2531
6SKG|1|BA|A|2532
6SKG|1|BA|C|2533
6SKG|1|BA|A|2534
6SKG|1|BA|G|2535
6SKG|1|BA|A|2536
6SKG|1|BA|A|2537
6SKG|1|BA|A|2538
6SKG|1|BA|A|2539

Current chains

Chain BA: 23S ribosomal RNA

Nearby chains

Chain BC: 50S ribosomal protein L2
Chain BO: 50S ribosomal protein L15
Chain BP: 50S ribosomal protein L15e
Chain BU: 50S ribosomal protein L21e
Chain Bl: 50S ribosomal protein L44e

J6_6SKG_002