J6_6SNT_001
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 6SNT|1|1|A|67, 6SNT|1|1|U|329, 6SNT|1|3|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SNT|1|1|G|22
6SNT|1|1|A|23
6SNT|1|1|G|24
6SNT|1|1|U|25
6SNT|1|1|A|26
6SNT|1|1|C|27
*
6SNT|1|1|G|58
6SNT|1|1|G|59
6SNT|1|1|A|60
6SNT|1|1|A|61
6SNT|1|1|A|62
6SNT|1|1|A|63
6SNT|1|1|G|64
6SNT|1|1|A|65
6SNT|1|1|A|66
6SNT|1|1|A|67
6SNT|1|1|C|68
*
6SNT|1|1|G|75
6SNT|1|1|G|76
6SNT|1|1|A|77
6SNT|1|1|U|78
6SNT|1|1|U|79
*
6SNT|1|1|A|106
6SNT|1|1|A|107
6SNT|1|1|A|108
6SNT|1|1|A|109
6SNT|1|1|G|110
*
6SNT|1|1|C|321
6SNT|1|1|U|322
6SNT|1|1|A|323
6SNT|1|1|A|324
6SNT|1|1|A|325
6SNT|1|1|U|326
6SNT|1|1|A|327
6SNT|1|1|U|328
6SNT|1|1|U|329
6SNT|1|1|G|330
6SNT|1|1|G|331
*
6SNT|1|3|C|32
6SNT|1|3|A|33
6SNT|1|3|U|34
6SNT|1|3|C|35
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain ag
- 60S ribosomal protein L37-A
- Chain ah
- 60S ribosomal protein L36-A
- Chain ai
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L4-A
- Chain r
- 60S ribosomal protein L13-A
- Chain t
- 60S ribosomal protein L15-A
Coloring options: