J6_6SNT_002
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 6SNT|1|1|G|2418, 6SNT|1|1|A|2799, 6SNT|1|1|A|2801, 6SNT|1|1|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SNT|1|1|U|2416
6SNT|1|1|U|2417
6SNT|1|1|G|2418
6SNT|1|1|A|2419
*
6SNT|1|1|U|2611
6SNT|1|1|U|2612
6SNT|1|1|U|2613
6SNT|1|1|G|2614
*
6SNT|1|1|C|2627
6SNT|1|1|A|2628
*
6SNT|1|1|U|2650
6SNT|1|1|G|2651
6SNT|1|1|U|2652
6SNT|1|1|C|2653
*
6SNT|1|1|G|2754
6SNT|1|1|C|2755
6SNT|1|1|C|2756
6SNT|1|1|U|2757
6SNT|1|1|A|2758
6SNT|1|1|U|2759
6SNT|1|1|C|2760
6SNT|1|1|G|2761
6SNT|1|1|A|2762
6SNT|1|1|U|2763
6SNT|1|1|C|2764
6SNT|1|1|C|2765
*
6SNT|1|1|G|2793
6SNT|1|1|G|2794
6SNT|1|1|U|2795
6SNT|1|1|G|2796
6SNT|1|1|C|2797
6SNT|1|1|C|2798
6SNT|1|1|A|2799
6SNT|1|1|G|2800
6SNT|1|1|A|2801
6SNT|1|1|A|2802
6SNT|1|1|A|2803
6SNT|1|1|A|2804
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain ab
- 60S ribosomal protein L42-A
- Chain ao
- 60S ribosomal protein L29
- Chain ap
- 60S ribosomal protein L28
- Chain h
- 60S ribosomal protein L2-A
- Chain t
- 60S ribosomal protein L15-A
- Chain w
- 60S ribosomal protein L18-A
- Chain z
- 60S ribosomal protein L21-A
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