J6_6SPB_001

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AUUAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6SPB|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPB|1|A|G|45
6SPB|1|A|G|46
*
6SPB|1|A|C|179
6SPB|1|A|G|180
6SPB|1|A|A|181
6SPB|1|A|A|182
6SPB|1|A|C|183
*
6SPB|1|A|G|214
6SPB|1|A|G|215
6SPB|1|A|A|216
6SPB|1|A|A|217
6SPB|1|A|A|218
6SPB|1|A|A|219
6SPB|1|A|G|220
6SPB|1|A|A|221
6SPB|1|A|A|222
6SPB|1|A|A|223
6SPB|1|A|U|224
*
6SPB|1|A|A|231
6SPB|1|A|G|232
6SPB|1|A|A|233
6SPB|1|A|U|234
6SPB|1|A|U|235
*
6SPB|1|A|A|262
6SPB|1|A|U|263
6SPB|1|A|U|264
6SPB|1|A|A|265
6SPB|1|A|G|266
*
6SPB|1|A|C|417
6SPB|1|A|U|418
6SPB|1|A|A|419
6SPB|1|A|A|420
6SPB|1|A|A|421
6SPB|1|A|U|422
6SPB|1|A|A|423
6SPB|1|A|C|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34