J6_6SPC_001
3D structure
- PDB id
- 6SPC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCUGGCCUUG*CAGGUGCUGCAUGGCUGUCGUCAGC*GCGCAACCCUUGUCC*GGAGACUGC*GAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGGCCAGGGCUACACACGUGCUAC*GGAAUCGCUAGUAAUCGUGAAUCAGAAUGUCACGGUGAAUACG
- Length
- 213 nucleotides
- Bulged bases
- 6SPC|1|a|A|931, 6SPC|1|a|A|932, 6SPC|1|a|G|933, 6SPC|1|a|G|936, 6SPC|1|a|U|937, 6SPC|1|a|G|938, 6SPC|1|a|G|939, 6SPC|1|a|C|942, 6SPC|1|a|A|943, 6SPC|1|a|U|944, 6SPC|1|a|U|946, 6SPC|1|a|U|949, 6SPC|1|a|U|950, 6SPC|1|a|U|951, 6SPC|1|a|A|952, 6SPC|1|a|U|954, 6SPC|1|a|G|960, 6SPC|1|a|C|961, 6SPC|1|a|A|962, 6SPC|1|a|G|965, 6SPC|1|a|A|969, 6SPC|1|a|G|970, 6SPC|1|a|A|971, 6SPC|1|a|A|972, 6SPC|1|a|C|973, 6SPC|1|a|U|975, 6SPC|1|a|U|976, 6SPC|1|a|A|977, 6SPC|1|a|C|978, 6SPC|1|a|U|985, 6SPC|1|a|U|1043, 6SPC|1|a|C|1048, 6SPC|1|a|A|1049, 6SPC|1|a|C|1053, 6SPC|1|a|G|1055, 6SPC|1|a|C|1057, 6SPC|1|a|G|1058, 6SPC|1|a|U|1059, 6SPC|1|a|A|1104, 6SPC|1|a|C|1107, 6SPC|1|a|C|1108, 6SPC|1|a|U|1109, 6SPC|1|a|A|1151, 6SPC|1|a|G|1171, 6SPC|1|a|G|1172, 6SPC|1|a|A|1173, 6SPC|1|a|G|1175, 6SPC|1|a|U|1177, 6SPC|1|a|G|1181, 6SPC|1|a|A|1182, 6SPC|1|a|U|1183, 6SPC|1|a|A|1190, 6SPC|1|a|A|1191, 6SPC|1|a|G|1192, 6SPC|1|a|U|1196, 6SPC|1|a|U|1206, 6SPC|1|a|C|1208, 6SPC|1|a|C|1217, 6SPC|1|a|U|1218, 6SPC|1|a|C|1220, 6SPC|1|a|U|1226, 6SPC|1|a|G|1332, 6SPC|1|a|A|1333, 6SPC|1|a|U|1345, 6SPC|1|a|A|1351, 6SPC|1|a|U|1352, 6SPC|1|a|C|1353, 6SPC|1|a|A|1354, 6SPC|1|a|G|1355, 6SPC|1|a|A|1356, 6SPC|1|a|A|1357, 6SPC|1|a|U|1358, 6SPC|1|a|U|1360, 6SPC|1|a|A|1369, 6SPC|1|a|U|1370
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPC|1|a|C|930
6SPC|1|a|A|931
6SPC|1|a|A|932
6SPC|1|a|G|933
6SPC|1|a|C|934
6SPC|1|a|G|935
6SPC|1|a|G|936
6SPC|1|a|U|937
6SPC|1|a|G|938
6SPC|1|a|G|939
6SPC|1|a|A|940
6SPC|1|a|G|941
6SPC|1|a|C|942
6SPC|1|a|A|943
6SPC|1|a|U|944
6SPC|1|a|G|945
6SPC|1|a|U|946
6SPC|1|a|G|947
6SPC|1|a|G|948
6SPC|1|a|U|949
6SPC|1|a|U|950
6SPC|1|a|U|951
6SPC|1|a|A|952
6SPC|1|a|A|953
6SPC|1|a|U|954
6SPC|1|a|U|955
6SPC|1|a|C|956
6SPC|1|a|G|957
6SPC|1|a|A|958
6SPC|1|a|A|959
6SPC|1|a|G|960
6SPC|1|a|C|961
6SPC|1|a|A|962
6SPC|1|a|A|963
6SPC|1|a|C|964
6SPC|1|a|G|965
6SPC|1|a|C|966
6SPC|1|a|G|967
6SPC|1|a|A|968
6SPC|1|a|A|969
6SPC|1|a|G|970
6SPC|1|a|A|971
6SPC|1|a|A|972
6SPC|1|a|C|973
6SPC|1|a|C|974
6SPC|1|a|U|975
6SPC|1|a|U|976
6SPC|1|a|A|977
6SPC|1|a|C|978
6SPC|1|a|C|979
6SPC|1|a|U|980
6SPC|1|a|G|981
6SPC|1|a|G|982
6SPC|1|a|C|983
6SPC|1|a|C|984
6SPC|1|a|U|985
6SPC|1|a|U|986
6SPC|1|a|G|987
*
6SPC|1|a|C|1039
6SPC|1|a|A|1040
6SPC|1|a|G|1041
6SPC|1|a|G|1042
6SPC|1|a|U|1043
6SPC|1|a|G|1044
6SPC|1|a|C|1045
6SPC|1|a|U|1046
6SPC|1|a|G|1047
6SPC|1|a|C|1048
6SPC|1|a|A|1049
6SPC|1|a|U|1050
6SPC|1|a|G|1051
6SPC|1|a|G|1052
6SPC|1|a|C|1053
6SPC|1|a|U|1054
6SPC|1|a|G|1055
6SPC|1|a|U|1056
6SPC|1|a|C|1057
6SPC|1|a|G|1058
6SPC|1|a|U|1059
6SPC|1|a|C|1060
6SPC|1|a|A|1061
6SPC|1|a|G|1062
6SPC|1|a|C|1063
*
6SPC|1|a|G|1100
6SPC|1|a|C|1101
6SPC|1|a|G|1102
6SPC|1|a|C|1103
6SPC|1|a|A|1104
6SPC|1|a|A|1105
6SPC|1|a|C|1106
6SPC|1|a|C|1107
6SPC|1|a|C|1108
6SPC|1|a|U|1109
6SPC|1|a|U|1110
6SPC|1|a|G|1111
6SPC|1|a|U|1112
6SPC|1|a|C|1113
6SPC|1|a|C|1114
*
6SPC|1|a|G|1147
6SPC|1|a|G|1148
6SPC|1|a|A|1149
6SPC|1|a|G|1150
6SPC|1|a|A|1151
6SPC|1|a|C|1152
6SPC|1|a|U|1153
6SPC|1|a|G|1154
6SPC|1|a|C|1155
*
6SPC|1|a|G|1169
6SPC|1|a|A|1170
6SPC|1|a|G|1171
6SPC|1|a|G|1172
6SPC|1|a|A|1173
6SPC|1|a|A|1174
6SPC|1|a|G|1175
6SPC|1|a|G|1176
6SPC|1|a|U|1177
6SPC|1|a|G|1178
6SPC|1|a|G|1179
6SPC|1|a|G|1180
6SPC|1|a|G|1181
6SPC|1|a|A|1182
6SPC|1|a|U|1183
6SPC|1|a|G|1184
6SPC|1|a|A|1185
6SPC|1|a|C|1186
6SPC|1|a|G|1187
6SPC|1|a|U|1188
6SPC|1|a|C|1189
6SPC|1|a|A|1190
6SPC|1|a|A|1191
6SPC|1|a|G|1192
6SPC|1|a|U|1193
6SPC|1|a|C|1194
6SPC|1|a|A|1195
6SPC|1|a|U|1196
6SPC|1|a|C|1197
6SPC|1|a|A|1198
6SPC|1|a|U|1199
6SPC|1|a|G|1200
6SPC|1|a|G|1201
6SPC|1|a|C|1202
6SPC|1|a|C|1203
6SPC|1|a|C|1204
6SPC|1|a|U|1205
6SPC|1|a|U|1206
6SPC|1|a|A|1207
6SPC|1|a|C|1208
6SPC|1|a|G|1209
6SPC|1|a|G|1210
6SPC|1|a|C|1211
6SPC|1|a|C|1212
6SPC|1|a|A|1213
6SPC|1|a|G|1214
6SPC|1|a|G|1215
6SPC|1|a|G|1216
6SPC|1|a|C|1217
6SPC|1|a|U|1218
6SPC|1|a|A|1219
6SPC|1|a|C|1220
6SPC|1|a|A|1221
6SPC|1|a|C|1222
6SPC|1|a|A|1223
6SPC|1|a|C|1224
6SPC|1|a|G|1225
6SPC|1|a|U|1226
6SPC|1|a|G|1227
6SPC|1|a|C|1228
6SPC|1|a|U|1229
6SPC|1|a|A|1230
6SPC|1|a|C|1231
*
6SPC|1|a|G|1331
6SPC|1|a|G|1332
6SPC|1|a|A|1333
6SPC|1|a|A|1334
6SPC|1|a|U|1335
6SPC|1|a|C|1336
6SPC|1|a|G|1337
6SPC|1|a|C|1338
6SPC|1|a|U|1339
6SPC|1|a|A|1340
6SPC|1|a|G|1341
6SPC|1|a|U|1342
6SPC|1|a|A|1343
6SPC|1|a|A|1344
6SPC|1|a|U|1345
6SPC|1|a|C|1346
6SPC|1|a|G|1347
6SPC|1|a|U|1348
6SPC|1|a|G|1349
6SPC|1|a|A|1350
6SPC|1|a|A|1351
6SPC|1|a|U|1352
6SPC|1|a|C|1353
6SPC|1|a|A|1354
6SPC|1|a|G|1355
6SPC|1|a|A|1356
6SPC|1|a|A|1357
6SPC|1|a|U|1358
6SPC|1|a|G|1359
6SPC|1|a|U|1360
6SPC|1|a|C|1361
6SPC|1|a|A|1362
6SPC|1|a|C|1363
6SPC|1|a|G|1364
6SPC|1|a|G|1365
6SPC|1|a|U|1366
6SPC|1|a|G|1367
6SPC|1|a|A|1368
6SPC|1|a|A|1369
6SPC|1|a|U|1370
6SPC|1|a|A|1371
6SPC|1|a|C|1372
6SPC|1|a|G|1373
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S5
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
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