J6_6SPD_001

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AUUAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6SPD|1|A|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPD|1|A|G|45
6SPD|1|A|G|46
*
6SPD|1|A|C|179
6SPD|1|A|G|180
6SPD|1|A|A|181
6SPD|1|A|A|182
6SPD|1|A|C|183
*
6SPD|1|A|G|214
6SPD|1|A|G|215
6SPD|1|A|A|216
6SPD|1|A|A|217
6SPD|1|A|A|218
6SPD|1|A|A|219
6SPD|1|A|G|220
6SPD|1|A|A|221
6SPD|1|A|A|222
6SPD|1|A|A|223
6SPD|1|A|U|224
*
6SPD|1|A|A|231
6SPD|1|A|G|232
6SPD|1|A|A|233
6SPD|1|A|U|234
6SPD|1|A|U|235
*
6SPD|1|A|A|262
6SPD|1|A|U|263
6SPD|1|A|U|264
6SPD|1|A|A|265
6SPD|1|A|G|266
*
6SPD|1|A|C|417
6SPD|1|A|U|418
6SPD|1|A|A|419
6SPD|1|A|A|420
6SPD|1|A|A|421
6SPD|1|A|U|422
6SPD|1|A|A|423
6SPD|1|A|C|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34