J6_6SWA_001

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUACCGG*CGUC

Length

42 nucleotides

Bulged bases

6SWA|1|q|A|66, 6SWA|1|q|C|334, 6SWA|1|r|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|21
6SWA|1|q|G|22
6SWA|1|q|C|23
6SWA|1|q|G|24
6SWA|1|q|A|25
6SWA|1|q|C|26
*
6SWA|1|q|G|57
6SWA|1|q|G|58
6SWA|1|q|A|59
6SWA|1|q|A|60
6SWA|1|q|A|61
6SWA|1|q|A|62
6SWA|1|q|G|63
6SWA|1|q|A|64
6SWA|1|q|A|65
6SWA|1|q|A|66
6SWA|1|q|C|67
*
6SWA|1|q|G|74
6SWA|1|q|G|75
6SWA|1|q|A|76
6SWA|1|q|U|77
6SWA|1|q|U|78
*
6SWA|1|q|A|105
6SWA|1|q|A|106
6SWA|1|q|G|107
6SWA|1|q|A|108
6SWA|1|q|G|109
*
6SWA|1|q|C|326
6SWA|1|q|U|327
6SWA|1|q|A|328
6SWA|1|q|A|329
6SWA|1|q|A|330
6SWA|1|q|U|331
6SWA|1|q|A|332
6SWA|1|q|C|333
6SWA|1|q|C|334
6SWA|1|q|G|335
6SWA|1|q|G|336
*
6SWA|1|r|C|32
6SWA|1|r|G|33
6SWA|1|r|U|34
6SWA|1|r|C|35

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Chain r

5.8S ribosomal RNA (157-MER)

Nearby chains

Chain C

60S ribosomal protein L4

Chain K

60S ribosomal protein L13

Chain M

60S ribosomal protein L15

Chain f

60S ribosomal protein L35

Chain g

60S ribosomal protein L36

Chain h

60S ribosomal protein L37