J6_6SWA_003
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 6SWA|1|q|G|3893, 6SWA|1|q|A|4338, 6SWA|1|q|A|4340, 6SWA|1|q|A|4341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWA|1|q|U|3891
6SWA|1|q|U|3892
6SWA|1|q|G|3893
6SWA|1|q|A|3894
*
6SWA|1|q|U|4150
6SWA|1|q|U|4151
6SWA|1|q|U|4152
6SWA|1|q|G|4153
*
6SWA|1|q|C|4166
6SWA|1|q|A|4167
*
6SWA|1|q|U|4189
6SWA|1|q|G|4190
6SWA|1|q|U|4191
6SWA|1|q|C|4192
*
6SWA|1|q|G|4293
6SWA|1|q|C|4294
6SWA|1|q|C|4295
6SWA|1|q|U|4296
6SWA|1|q|C|4297
6SWA|1|q|A|4298
6SWA|1|q|C|4299
6SWA|1|q|G|4300
6SWA|1|q|A|4301
6SWA|1|q|U|4302
6SWA|1|q|C|4303
6SWA|1|q|C|4304
*
6SWA|1|q|G|4332
6SWA|1|q|G|4333
6SWA|1|q|U|4334
6SWA|1|q|G|4335
6SWA|1|q|U|4336
6SWA|1|q|C|4337
6SWA|1|q|A|4338
6SWA|1|q|G|4339
6SWA|1|q|A|4340
6SWA|1|q|A|4341
6SWA|1|q|A|4342
6SWA|1|q|A|4343
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain M
- 60S ribosomal protein L15
- Chain P
- 60S ribosomal protein L18
- Chain R
- 60S ribosomal protein L21
- Chain Y
- 60S ribosomal protein L27a
- Chain Z
- 60S ribosomal protein L29
- Chain m
- MCG115063, isoform CRA_a
Coloring options: