J6_6SZS_001

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6SZS|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SZS|1|A|G|45
6SZS|1|A|G|46
*
6SZS|1|A|C|179
6SZS|1|A|G|180
6SZS|1|A|A|181
6SZS|1|A|A|182
6SZS|1|A|C|183
*
6SZS|1|A|G|214
6SZS|1|A|G|215
6SZS|1|A|A|216
6SZS|1|A|A|217
6SZS|1|A|A|218
6SZS|1|A|A|219
6SZS|1|A|G|220
6SZS|1|A|A|221
6SZS|1|A|A|222
6SZS|1|A|A|223
6SZS|1|A|U|224
*
6SZS|1|A|A|231
6SZS|1|A|G|232
6SZS|1|A|A|233
6SZS|1|A|U|234
6SZS|1|A|U|235
*
6SZS|1|A|A|262
6SZS|1|A|G|263
6SZS|1|A|C|264
6SZS|1|A|A|265
6SZS|1|A|G|266
*
6SZS|1|A|C|426
6SZS|1|A|U|427
6SZS|1|A|A|428
6SZS|1|A|A|429
6SZS|1|A|A|430
6SZS|1|A|U|431
6SZS|1|A|A|432
6SZS|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34