J6_6TBV_001

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6TBV|1|23S1|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TBV|1|23S1|G|45
6TBV|1|23S1|G|46
*
6TBV|1|23S1|C|179
6TBV|1|23S1|G|180
6TBV|1|23S1|A|181
6TBV|1|23S1|A|182
6TBV|1|23S1|C|183
*
6TBV|1|23S1|G|214
6TBV|1|23S1|G|215
6TBV|1|23S1|A|216
6TBV|1|23S1|A|217
6TBV|1|23S1|A|218
6TBV|1|23S1|A|219
6TBV|1|23S1|G|220
6TBV|1|23S1|A|221
6TBV|1|23S1|A|222
6TBV|1|23S1|A|223
6TBV|1|23S1|U|224
*
6TBV|1|23S1|A|231
6TBV|1|23S1|G|232
6TBV|1|23S1|A|233
6TBV|1|23S1|U|234
6TBV|1|23S1|U|235
*
6TBV|1|23S1|A|262
6TBV|1|23S1|G|263
6TBV|1|23S1|C|264
6TBV|1|23S1|A|265
6TBV|1|23S1|G|266
*
6TBV|1|23S1|C|426
6TBV|1|23S1|U|427
6TBV|1|23S1|A|428
6TBV|1|23S1|A|429
6TBV|1|23S1|A|430
6TBV|1|23S1|U|431
6TBV|1|23S1|A|432
6TBV|1|23S1|C|433

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L341

50S ribosomal protein L34