J6_6TH6_001

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GC*GGAAC*GGAAAAGAAA(OMG)*CGAUG*CACAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6TH6|1|BA|A|214

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TH6|1|BA|G|54
6TH6|1|BA|C|55
*
6TH6|1|BA|G|170
6TH6|1|BA|G|171
6TH6|1|BA|A|172
6TH6|1|BA|A|173
6TH6|1|BA|C|174
*
6TH6|1|BA|G|205
6TH6|1|BA|G|206
6TH6|1|BA|A|207
6TH6|1|BA|A|208
6TH6|1|BA|A|209
6TH6|1|BA|A|210
6TH6|1|BA|G|211
6TH6|1|BA|A|212
6TH6|1|BA|A|213
6TH6|1|BA|A|214
6TH6|1|BA|OMG|215
*
6TH6|1|BA|C|222
6TH6|1|BA|G|223
6TH6|1|BA|A|224
6TH6|1|BA|U|225
6TH6|1|BA|G|226
*
6TH6|1|BA|C|253
6TH6|1|BA|A|254
6TH6|1|BA|C|255
6TH6|1|BA|A|256
6TH6|1|BA|G|257
*
6TH6|1|BA|C|466
6TH6|1|BA|U|467
6TH6|1|BA|A|468
6TH6|1|BA|A|469
6TH6|1|BA|A|470
6TH6|1|BA|U|471
6TH6|1|BA|A|472
6TH6|1|BA|C|473

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L15e

Chain Bh

50S ribosomal protein L37e