J6_6TPQ_001
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GC*GCAGAC*GGAAGAGAAAG*CGAUU*AUCAG*CUAAAUAC
- Length
- 37 nucleotides
- Bulged bases
- 6TPQ|1|U|G|182, 6TPQ|1|U|A|224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6TPQ|1|U|G|43
6TPQ|1|U|C|44
*
6TPQ|1|U|G|179
6TPQ|1|U|C|180
6TPQ|1|U|A|181
6TPQ|1|U|G|182
6TPQ|1|U|A|183
6TPQ|1|U|C|184
*
6TPQ|1|U|G|215
6TPQ|1|U|G|216
6TPQ|1|U|A|217
6TPQ|1|U|A|218
6TPQ|1|U|G|219
6TPQ|1|U|A|220
6TPQ|1|U|G|221
6TPQ|1|U|A|222
6TPQ|1|U|A|223
6TPQ|1|U|A|224
6TPQ|1|U|G|225
*
6TPQ|1|U|C|232
6TPQ|1|U|G|233
6TPQ|1|U|A|234
6TPQ|1|U|U|235
6TPQ|1|U|U|236
*
6TPQ|1|U|A|263
6TPQ|1|U|U|264
6TPQ|1|U|C|265
6TPQ|1|U|A|266
6TPQ|1|U|G|267
*
6TPQ|1|U|C|471
6TPQ|1|U|U|472
6TPQ|1|U|A|473
6TPQ|1|U|A|474
6TPQ|1|U|A|475
6TPQ|1|U|U|476
6TPQ|1|U|A|477
6TPQ|1|U|C|478
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain r
- 50S ribosomal protein L34
Coloring options: