J6_6UO1_003

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6UO1|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UO1|1|2A|G|44
6UO1|1|2A|C|45
*
6UO1|1|2A|G|179
6UO1|1|2A|G|180
6UO1|1|2A|A|181
6UO1|1|2A|A|182
6UO1|1|2A|C|183
*
6UO1|1|2A|G|214
6UO1|1|2A|G|215
6UO1|1|2A|A|216
6UO1|1|2A|G|217
6UO1|1|2A|A|218
6UO1|1|2A|G|219
6UO1|1|2A|G|220
6UO1|1|2A|A|221
6UO1|1|2A|A|222
6UO1|1|2A|A|223
6UO1|1|2A|G|224
*
6UO1|1|2A|C|231
6UO1|1|2A|G|232
6UO1|1|2A|A|233
6UO1|1|2A|C|234
6UO1|1|2A|U|235
*
6UO1|1|2A|A|262
6UO1|1|2A|C|263
6UO1|1|2A|C|264
6UO1|1|2A|A|265
6UO1|1|2A|G|266
*
6UO1|1|2A|C|426
6UO1|1|2A|U|427
6UO1|1|2A|A|428
6UO1|1|2A|A|429
6UO1|1|2A|G|430
6UO1|1|2A|U|431
6UO1|1|2A|A|432
6UO1|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34